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The following menu items will bring up a dialog with the parameters for the particular processing and buttons to begin processing. Whenever a button is pressed in one of the dialogs, an Image Selection dialog will be presented to select the images for processing. During most processing, a status indicator will appear in the Main Window as shown below.

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Reconstruction
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Venograph, use this dialog to perform reconstruction on raw image data to enhance vascular structures.
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Pre-Processing
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Fit
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Quick, use this dialog to perform restoration on images to increase the signal to Noise Ratio. Only the minimal options are displayed for the typical use of restoration.
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Complete, use this dialog to perform restoration on images to increase the signal to Noise Ratio. All possible options are displayed for the most flexible use of restoration.
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Orthogonal Views, use this dialog to change the image orientation (sagital, coronal, or axial)
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Smooth, use this dialog to apply kernels on images.
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Deformable Contour, use this dialog to deform a single contour.
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Segmentation, use this dialog to apply various filters to a set of images.
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Cluster
Iso-Data, to separate images into their components.
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Image Plot, use this dialog to plot 2-4 images, create region of interest images, and classify images.
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Post-Processing
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Substance
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Browsers, use this dialog to perform substance overlap processing on sets of filtered images.
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Images, use this dialog to perform substance overlap processing on filtered images.
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Miscellaneous
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Math, use this dialog to perform various math operations on an image or set of images.
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Dicom Header, use this dialog to view and modify the contents of the DICOM header for an image or set of images.
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Simulations, use this dialog to create simulated images from the selected signature files.
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External Programs, use this window to run external programs that accept HFH format image file names in the command line or output a list of HFH format image file names.
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3d
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Registration, use this dialog to register two sets of images using contours.
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Spectroscopy, use this dialog to perform spectroscopic analysis on raw spectral data.
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Loading Localizer Image and Raw Spectra Files, use this dialog to load the localizer images and the associated raw spectral data.
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2d FFT Processing, use this dialog to perform 2d FFT processing on each spectra.
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Time Domain Processing, use this dialog to perform time domain processing on each spectra.
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Display Spectral Data
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Calibrate Parts Per Million Scale
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Susceptibility Processing, use this dialog to align spectra to a reference spectra.
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Batch Analysis Processing, use this dialog to calculate the area under the peaks of the spectra, e.g., choline, creatine, etc.
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Print Functions, use this dialog to print the spectroscopy histogram to a file or printer.
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